IL_6XHX_325

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHX_325 not in the Motif Atlas

Homologous match to IL_4LFB_039

Geometric discrepancy: 0.1456

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6XHX|1|2a|G|993
6XHX|1|2a|A|994
6XHX|1|2a|C|995
6XHX|1|2a|A|996
6XHX|1|2a|U|997
*
6XHX|1|2a|A|1044
6XHX|1|2a|C|1045

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z