3D structure

PDB id
6XHX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GGAG*UGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XHX_342 not in the Motif Atlas
Homologous match to IL_5J7L_062
Geometric discrepancy: 0.0766
The information below is about IL_5J7L_062
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

6XHX|1|2a|G|1416
6XHX|1|2a|G|1417
6XHX|1|2a|A|1418
6XHX|1|2a|G|1419
*
6XHX|1|2a|U|1481
6XHX|1|2a|G|1482
6XHX|1|2a|A|1483
6XHX|1|2a|C|1484

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2A
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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