IL_6XHY_299

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHY_299 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1053

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6XHY|1|2a|G|409
6XHY|1|2a|G|410
6XHY|1|2a|A|411
6XHY|1|2a|A|412
6XHY|1|2a|G|413
6XHY|1|2a|A|414
6XHY|1|2a|A|415
6XHY|1|2a|G|416
*
6XHY|1|2a|U|427
6XHY|1|2a|G|428
6XHY|1|2a|U|429
6XHY|1|2a|A|430
6XHY|1|2a|A|431
6XHY|1|2a|A|432
6XHY|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4