IL_6XIJ_045

3D structure

PDB id

6XIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6XIJ|1|D|U|1025, 6XIJ|1|D|U|1030, 6XIJ|1|D|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIJ|1|D|G|1003
6XIJ|1|D|A|1004
6XIJ|1|D|A|1005
6XIJ|1|D|G|1006
*
6XIJ|1|D|U|1023
6XIJ|1|D|G|1024
6XIJ|1|D|U|1025
6XIJ|1|D|G|1026
6XIJ|1|D|C|1027
6XIJ|1|D|C|1028
6XIJ|1|D|U|1029
6XIJ|1|D|U|1030
6XIJ|1|D|C|1031
6XIJ|1|D|G|1032
6XIJ|1|D|G|1033
6XIJ|1|D|G|1034
6XIJ|1|D|A|1035
6XIJ|1|D|A|1036
6XIJ|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain AA

DNA-directed RNA polymerase subunit beta

Chain S

30S ribosomal protein S14