IL_6XIJ_077

3D structure

PDB id

6XIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6XIJ|1|a|A|504, 6XIJ|1|a|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIJ_077 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0632

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6XIJ|1|a|G|481
6XIJ|1|a|A|482
6XIJ|1|a|A|483
6XIJ|1|a|C|484
*
6XIJ|1|a|G|496
6XIJ|1|a|A|497
6XIJ|1|a|G|498
6XIJ|1|a|U|499
6XIJ|1|a|G|500
6XIJ|1|a|A|501
6XIJ|1|a|A|502
6XIJ|1|a|A|503
6XIJ|1|a|A|504
6XIJ|1|a|A|505
6XIJ|1|a|G|506
6XIJ|1|a|A|507
6XIJ|1|a|A|508
6XIJ|1|a|C|509

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24