IL_6XIJ_199

3D structure

PDB id

6XIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

6XIJ|1|a|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIJ|1|a|G|2123
6XIJ|1|a|G|2124
6XIJ|1|a|G|2125
6XIJ|1|a|A|2126
6XIJ|1|a|G|2127
*
6XIJ|1|a|C|2161
6XIJ|1|a|G|2162
6XIJ|1|a|A|2163
6XIJ|1|a|C|2164
6XIJ|1|a|C|2165
6XIJ|1|a|U|2166
6XIJ|1|a|U|2167
6XIJ|1|a|G|2168
6XIJ|1|a|A|2169
6XIJ|1|a|A|2170
6XIJ|1|a|A|2171
6XIJ|1|a|U|2172
6XIJ|1|a|A|2173
6XIJ|1|a|C|2174
6XIJ|1|a|C|2175

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA