IL_6XMG_002

3D structure

PDB id

6XMG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Cas12g ternary complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UAGUCAUCUG*CG

Length

12 nucleotides

Bulged bases

6XMG|1|C|A|14, 6XMG|1|C|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XMG_002 not in the Motif Atlas

Geometric match to IL_5W1H_001

Geometric discrepancy: 0.2213

The information below is about IL_5W1H_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6XMG|1|C|U|13
6XMG|1|C|A|14
6XMG|1|C|G|15
6XMG|1|C|U|16
6XMG|1|C|C|17
6XMG|1|C|A|18
6XMG|1|C|U|19
6XMG|1|C|C|20
6XMG|1|C|U|21
6XMG|1|C|G|22
*
6XMG|1|C|C|71
6XMG|1|C|G|72

Current chains

Chain C

RNA (130-MER)

Nearby chains

Chain A

CRISPR-Cas