3D structure

PDB id
6XQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CGAAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
6XQD|1|1A|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XQD_040 not in the Motif Atlas
Homologous match to IL_7RQB_042
Geometric discrepancy: 0.1114
The information below is about IL_7RQB_042
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90538.4
Basepair signature
cWW-tSS-tSH-L-tHS-R-cWW-L-L
Number of instances in this motif group
6

Unit IDs

6XQD|1|1A|C|1043
6XQD|1|1A|G|1044
6XQD|1|1A|A|1045
6XQD|1|1A|A|1046
6XQD|1|1A|G|1047
6XQD|1|1A|A|1048
6XQD|1|1A|C|1049
6XQD|1|1A|A|1050
6XQD|1|1A|G|1051
*
6XQD|1|1A|U|1108
6XQD|1|1A|C|1109
6XQD|1|1A|G|1110
6XQD|1|1A|A|1111
6XQD|1|1A|G|1112

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1H
50S ribosomal protein L6

Coloring options:


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