IL_6XQD_041

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGGC*GCCAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQD|1|1A|G|1059
6XQD|1|1A|U|1060
6XQD|1|1A|G|1062
6XQD|1|1A|G|1063
6XQD|1|1A|C|1064
*
6XQD|1|1A|G|1074
6XQD|1|1A|C|1075
6XQD|1|1A|C|1076
6XQD|1|1A|A|1077
6XQD|1|1A|U|1078
6XQD|1|1A|C|1079

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains