IL_6XQD_054

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAG*CAGG

Length

7 nucleotides

Bulged bases

6XQD|1|1A|G|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQD_054 not in the Motif Atlas

Homologous match to IL_7RQB_056

Geometric discrepancy: 0.0781

The information below is about IL_7RQB_056

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.7

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

6XQD|1|1A|U|1433
6XQD|1|1A|A|1434
6XQD|1|1A|G|1435
*
6XQD|1|1A|C|1557
6XQD|1|1A|A|1558
6XQD|1|1A|G|1559
6XQD|1|1A|G|1560

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains