IL_6XQD_075

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6XQD|1|1A|A|1938, 6XQD|1|1A|U|1944, 6XQD|1|1A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQD_075 not in the Motif Atlas

Homologous match to IL_7RQB_077

Geometric discrepancy: 0.068

The information below is about IL_7RQB_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQD|1|1A|C|1934
6XQD|1|1A|G|1935
6XQD|1|1A|A|1936
6XQD|1|1A|A|1937
6XQD|1|1A|A|1938
6XQD|1|1A|5MU|1939
6XQD|1|1A|U|1940
6XQD|1|1A|C|1941
6XQD|1|1A|5MC|1942
6XQD|1|1A|U|1943
6XQD|1|1A|U|1944
6XQD|1|1A|G|1945
*
6XQD|1|1A|C|1961
6XQD|1|1A|5MC|1962
6XQD|1|1A|U|1963
6XQD|1|1A|G|1964

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA