IL_6XQD_122
3D structure
- PDB id
- 6XQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GACAACC*GGCUAAUC
- Length
- 15 nucleotides
- Bulged bases
- 6XQD|1|1a|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XQD_122 not in the Motif Atlas
- Homologous match to IL_6CZR_121
- Geometric discrepancy: 0.1794
- The information below is about IL_6CZR_121
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.5
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XQD|1|1a|G|148
6XQD|1|1a|A|149
6XQD|1|1a|C|150
6XQD|1|1a|A|151
6XQD|1|1a|A|152
6XQD|1|1a|C|153
6XQD|1|1a|C|154
*
6XQD|1|1a|G|167
6XQD|1|1a|G|168
6XQD|1|1a|C|169
6XQD|1|1a|U|170
6XQD|1|1a|A|171
6XQD|1|1a|A|172
6XQD|1|1a|U|173
6XQD|1|1a|C|174
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1t
- 30S ribosomal protein S20
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