IL_6XQD_178

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

6XQD|1|2A|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQD_178 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.0718

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

6XQD|1|2A|G|81
6XQD|1|2A|G|82
6XQD|1|2A|G|83
6XQD|1|2A|A|84
6XQD|1|2A|G|85
*
6XQD|1|2A|C|97
6XQD|1|2A|G|98
6XQD|1|2A|U|99
6XQD|1|2A|G|100
6XQD|1|2A|G|102
6XQD|1|2A|A|103
6XQD|1|2A|U|104
6XQD|1|2A|C|105

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L29

Chain 2Y

50S ribosomal protein L24