IL_6XQD_181

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQD_181 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0604

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6XQD|1|2A|U|239
6XQD|1|2A|G|240
6XQD|1|2A|A|241
6XQD|1|2A|G|242
6XQD|1|2A|U|243
6XQD|1|2A|A|244
6XQD|1|2A|G|245
*
6XQD|1|2A|C|253
6XQD|1|2A|G|254
6XQD|1|2A|A|255
6XQD|1|2A|A|256
6XQD|1|2A|A|257
6XQD|1|2A|G|258

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2P

50S ribosomal protein L15