IL_6XQD_196
3D structure
- PDB id
- 6XQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 6XQD|1|2A|G|776, 6XQD|1|2A|A|788, 6XQD|1|2A|A|789, 6XQD|1|2A|C|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XQD_196 not in the Motif Atlas
- Homologous match to IL_7RQB_023
- Geometric discrepancy: 0.102
- The information below is about IL_7RQB_023
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.6
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6XQD|1|2A|G|775
6XQD|1|2A|G|776
6XQD|1|2A|A|777
*
6XQD|1|2A|U|787
6XQD|1|2A|A|788
6XQD|1|2A|A|789
6XQD|1|2A|C|790
6XQD|1|2A|C|791
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 27
- 50S ribosomal protein L34
- Chain 2D
- 50S ribosomal protein L2
- Chain 2F
- 50S ribosomal protein L4
- Chain 2W
- 50S ribosomal protein L22
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