IL_6XQD_204

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCUAGGG*UACCAAAC

Length

15 nucleotides

Bulged bases

6XQD|1|2A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQD|1|2A|G|875
6XQD|1|2A|C|876
6XQD|1|2A|U|877
6XQD|1|2A|A|878
6XQD|1|2A|G|879
6XQD|1|2A|G|880
6XQD|1|2A|G|881
*
6XQD|1|2A|U|895
6XQD|1|2A|A|896
6XQD|1|2A|C|897
6XQD|1|2A|C|898
6XQD|1|2A|A|899
6XQD|1|2A|A|900
6XQD|1|2A|A|901
6XQD|1|2A|C|902

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25