IL_6XQD_210

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

6XQD|1|2A|U|1142, 6XQD|1|2A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQD_210 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1174

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6XQD|1|2A|C|1018
6XQD|1|2A|U|1019
6XQD|1|2A|A|1020
6XQD|1|2A|A|1021
6XQD|1|2A|G|1022
6XQD|1|2A|U|1023
6XQD|1|2A|G|1024
*
6XQD|1|2A|C|1140
6XQD|1|2A|U|1141
6XQD|1|2A|U|1142
6XQD|1|2A|A|1142|||A
6XQD|1|2A|A|1143
6XQD|1|2A|G|1144

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2N

50S ribosomal protein L13