3D structure

PDB id
6XQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
6XQD|1|2A|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XQD_236 not in the Motif Atlas
Homologous match to IL_7RQB_068
Geometric discrepancy: 0.1231
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

6XQD|1|2A|C|1686
6XQD|1|2A|G|1687
6XQD|1|2A|U|1688
6XQD|1|2A|A|1689
6XQD|1|2A|A|1690
6XQD|1|2A|C|1691
*
6XQD|1|2A|G|1696
6XQD|1|2A|G|1697
6XQD|1|2A|A|1698
6XQD|1|2A|G|1699
6XQD|1|2A|A|1700
6XQD|1|2A|A|1701
6XQD|1|2A|G|1702

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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