IL_6XQD_238

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6XQD|1|2A|G|1801, 6XQD|1|2A|G|1816, 6XQD|1|2A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQD_238 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0502

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6XQD|1|2A|U|1798
6XQD|1|2A|G|1799
6XQD|1|2A|C|1800
6XQD|1|2A|G|1801
6XQD|1|2A|A|1802
6XQD|1|2A|A|1803
6XQD|1|2A|C|1804
*
6XQD|1|2A|G|1813
6XQD|1|2A|G|1814
6XQD|1|2A|A|1815
6XQD|1|2A|G|1816
6XQD|1|2A|G|1817
6XQD|1|2A|U|1818
6XQD|1|2A|A|1819
6XQD|1|2A|U|1820
6XQD|1|2A|A|1821

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA