IL_6XQD_303
3D structure
- PDB id
- 6XQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGGCCAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XQD_303 not in the Motif Atlas
- Homologous match to IL_5J7L_024
- Geometric discrepancy: 0.1052
- The information below is about IL_5J7L_024
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
6XQD|1|2a|C|504
6XQD|1|2a|G|505
6XQD|1|2a|G|506
6XQD|1|2a|C|507
6XQD|1|2a|C|508
6XQD|1|2a|A|509
6XQD|1|2a|A|510
6XQD|1|2a|C|511
*
6XQD|1|2a|G|540
6XQD|1|2a|G|541
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2d
- 30S ribosomal protein S4
- Chain 2e
- 30S ribosomal protein S5
- Chain 2l
- 30S ribosomal protein S12
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