IL_6XQD_339

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GU(5MC)ACG*CGAAGUC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQD|1|2a|G|1405
6XQD|1|2a|U|1406
6XQD|1|2a|5MC|1407
6XQD|1|2a|A|1408
6XQD|1|2a|C|1409
6XQD|1|2a|G|1410
*
6XQD|1|2a|C|1490
6XQD|1|2a|G|1491
6XQD|1|2a|A|1492
6XQD|1|2a|A|1493
6XQD|1|2a|G|1494
6XQD|1|2a|U|1495
6XQD|1|2a|C|1496

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2l

30S ribosomal protein S12

Chain 2v

mRNA