IL_6XQD_356

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQD_356 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0628

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6XQD|1|2A|G|1666
6XQD|1|2A|G|1667
6XQD|1|2A|A|1668
6XQD|1|2A|A|1669
6XQD|1|2A|C|1670
6XQD|1|2A|U|1671
6XQD|1|2A|C|1672
6XQD|1|2A|U|1673
6XQD|1|2A|G|1674
*
6XQD|1|2A|C|1990
6XQD|1|2A|U|1991
6XQD|1|2A|G|1992
6XQD|1|2A|U|1993
6XQD|1|2A|C|1994

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14