IL_6XQE_020

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_020 not in the Motif Atlas

Homologous match to IL_4WF9_024

Geometric discrepancy: 0.1024

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6XQE|1|1A|U|703
6XQE|1|1A|G|704
6XQE|1|1A|A|705
6XQE|1|1A|A|706
6XQE|1|1A|G|707
*
6XQE|1|1A|U|724
6XQE|1|1A|G|725
6XQE|1|1A|G|726
6XQE|1|1A|A|727
6XQE|1|1A|G|728

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2