3D structure

PDB id
6XQE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CCG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XQE_188 not in the Motif Atlas
Homologous match to IL_7RQB_017
Geometric discrepancy: 0.1196
The information below is about IL_7RQB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86319.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
270

Unit IDs

6XQE|1|2A|C|672
6XQE|1|2A|C|673
6XQE|1|2A|G|674
*
6XQE|1|2A|C|806
6XQE|1|2A|U|807
6XQE|1|2A|G|808

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2F
50S ribosomal protein L4
Chain 2P
50S ribosomal protein L15

Coloring options:


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