IL_6XQE_235

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

6XQE|1|2A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_235 not in the Motif Atlas

Geometric match to IL_5J7L_307

Geometric discrepancy: 0.094

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6XQE|1|2A|A|1669
6XQE|1|2A|C|1670
6XQE|1|2A|U|1671
6XQE|1|2A|C|1672
6XQE|1|2A|U|1673
6XQE|1|2A|G|1674
*
6XQE|1|2A|C|1990
6XQE|1|2A|U|1991
6XQE|1|2A|G|1992
6XQE|1|2A|U|1993

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14