IL_6XQE_243

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGAGG*CCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_243 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.3467

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6XQE|1|2A|G|1856
6XQE|1|2A|G|1857
6XQE|1|2A|G|1858
6XQE|1|2A|A|1859
6XQE|1|2A|G|1860
6XQE|1|2A|G|1861
*
6XQE|1|2A|C|1881
6XQE|1|2A|C|1882
6XQE|1|2A|G|1883
6XQE|1|2A|A|1884
6XQE|1|2A|A|1885
6XQE|1|2A|C|1886

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28