IL_6XQE_253

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_253 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.22

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6XQE|1|2A|G|2110
6XQE|1|2A|C|2111
6XQE|1|2A|G|2112
6XQE|1|2A|U|2113
6XQE|1|2A|A|2114
6XQE|1|2A|G|2115
6XQE|1|2A|G|2116
6XQE|1|2A|A|2117
6XQE|1|2A|U|2118
6XQE|1|2A|A|2119
6XQE|1|2A|G|2120
6XQE|1|2A|G|2121
*
6XQE|1|2A|C|2177
6XQE|1|2A|C|2178
6XQE|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains