IL_6XQE_351

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

6XQE|1|1A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_351 not in the Motif Atlas

Homologous match to IL_9DFE_106

Geometric discrepancy: 0.0861

The information below is about IL_9DFE_106

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6XQE|1|1A|G|2737
6XQE|1|1A|A|2738
6XQE|1|1A|U|2739
6XQE|1|1A|A|2740
6XQE|1|1A|A|2741
6XQE|1|1A|C|2742
*
6XQE|1|1A|G|2762
6XQE|1|1A|G|2763
6XQE|1|1A|A|2764
6XQE|1|1A|A|2765
6XQE|1|1A|G|2766
6XQE|1|1A|C|2767

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13