IL_6XQE_371

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGAUGGUAC*GGAGAGUAGG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQE|1|2B|C|70
6XQE|1|2B|C|71
6XQE|1|2B|G|72
6XQE|1|2B|A|73
6XQE|1|2B|U|74
6XQE|1|2B|G|75
6XQE|1|2B|G|76
6XQE|1|2B|U|77
6XQE|1|2B|A|78
6XQE|1|2B|C|79
*
6XQE|1|2B|G|98
6XQE|1|2B|G|99
6XQE|1|2B|A|100
6XQE|1|2B|G|101
6XQE|1|2B|A|102
6XQE|1|2B|G|103
6XQE|1|2B|U|104
6XQE|1|2B|A|105
6XQE|1|2B|G|106
6XQE|1|2B|G|107

Current chains

Chain 2B

5S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25