IL_6XYW_008
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- UUAGUAG*CGAGAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XYW_008 not in the Motif Atlas
- Homologous match to IL_7RQB_007
- Geometric discrepancy: 0.2672
- The information below is about IL_7RQB_007
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6XYW|1|1|U|224
6XYW|1|1|U|225
6XYW|1|1|A|226
6XYW|1|1|G|227
6XYW|1|1|U|228
6XYW|1|1|A|229
6XYW|1|1|G|230
*
6XYW|1|1|C|238
6XYW|1|1|G|239
6XYW|1|1|A|240
6XYW|1|1|G|241
6XYW|1|1|A|242
6XYW|1|1|G|243
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AD
- Ribosomal protein L35
- Chain Al
- Ribosomal protein L18e/L15 superfamily protein
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