IL_6XYW_011
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GAAC*GAGUGCAAUAGAGAAC
- Length
- 20 nucleotides
- Bulged bases
- 6XYW|1|1|A|645, 6XYW|1|1|G|646, 6XYW|1|1|A|650
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XYW_011 not in the Motif Atlas
- Homologous match to IL_7A0S_009
- Geometric discrepancy: 0.5895
- The information below is about IL_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.1
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 9
Unit IDs
6XYW|1|1|G|622
6XYW|1|1|A|623
6XYW|1|1|A|624
6XYW|1|1|C|625
*
6XYW|1|1|G|636
6XYW|1|1|A|637
6XYW|1|1|G|638
6XYW|1|1|U|639
6XYW|1|1|G|640
6XYW|1|1|C|641
6XYW|1|1|A|642
6XYW|1|1|A|643
6XYW|1|1|U|644
6XYW|1|1|A|645
6XYW|1|1|G|646
6XYW|1|1|A|647
6XYW|1|1|G|648
6XYW|1|1|A|649
6XYW|1|1|A|650
6XYW|1|1|C|651
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain As
- AT1G52370 protein
- Chain Au
- 50S ribosomal protein L24
Coloring options: