IL_6XYW_015

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UUAAG*UGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_015 not in the Motif Atlas

Homologous match to IL_7A0S_013

Geometric discrepancy: 0.2661

The information below is about IL_7A0S_013

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6XYW|1|1|U|755
6XYW|1|1|U|756
6XYW|1|1|A|757
6XYW|1|1|A|758
6XYW|1|1|G|759
*
6XYW|1|1|U|768
6XYW|1|1|G|769
6XYW|1|1|U|770
6XYW|1|1|A|771
6XYW|1|1|G|772

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ad

50S ribosomal protein L4

Chain Al

Ribosomal protein L18e/L15 superfamily protein