IL_6XYW_016

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_016 not in the Motif Atlas

Homologous match to IL_7A0S_014

Geometric discrepancy: 0.1607

The information below is about IL_7A0S_014

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6XYW|1|1|C|815
6XYW|1|1|C|816
6XYW|1|1|G|817
*
6XYW|1|1|C|950
6XYW|1|1|U|951
6XYW|1|1|G|952

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ad

50S ribosomal protein L4

Chain Al

Ribosomal protein L18e/L15 superfamily protein