IL_6XYW_018

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

6XYW|1|1|A|908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_018 not in the Motif Atlas

Homologous match to IL_5J7L_261

Geometric discrepancy: 0.1226

The information below is about IL_5J7L_261

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6XYW|1|1|G|840
6XYW|1|1|C|841
*
6XYW|1|1|G|907
6XYW|1|1|A|908
6XYW|1|1|C|909

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AN

At3g51010

Chain Aa

60S ribosomal protein L2, mitochondrial

Chain Ab

Expressed protein