IL_6XYW_020

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_020 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.1345

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6XYW|1|1|U|846
6XYW|1|1|G|847
6XYW|1|1|A|848
6XYW|1|1|A|849
6XYW|1|1|G|850
*
6XYW|1|1|U|868
6XYW|1|1|G|869
6XYW|1|1|G|870
6XYW|1|1|A|871
6XYW|1|1|G|872

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ab

Expressed protein