IL_6XYW_037

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

6XYW|1|1|A|1144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_037 not in the Motif Atlas

Homologous match to IL_7A0S_032

Geometric discrepancy: 0.2842

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

6XYW|1|1|U|1143
6XYW|1|1|A|1144
6XYW|1|1|C|1145
*
6XYW|1|1|G|1309
6XYW|1|1|A|1310

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AH

Mitochondrial ribosomal protein L51/S25/CI-B8 family protein

Chain Aq

50S ribosomal protein L20

Chain Ar

50S ribosomal protein L21, mitochondrial

Chain Az

At5g55140