IL_6XYW_039

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UCCCUAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_039 not in the Motif Atlas

Homologous match to IL_7RQB_037

Geometric discrepancy: 0.2345

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6XYW|1|1|U|1153
6XYW|1|1|C|1154
6XYW|1|1|C|1155
6XYW|1|1|C|1156
6XYW|1|1|U|1157
6XYW|1|1|A|1158
6XYW|1|1|A|1159
6XYW|1|1|G|1160
*
6XYW|1|1|C|1300
6XYW|1|1|A|1301

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AL

Uncharacterized protein At1g27435/F17L21.30

Chain Aj

At1g01640

Chain Aq

50S ribosomal protein L20