IL_6XYW_040

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

6XYW|1|1|C|1161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_040 not in the Motif Atlas

Homologous match to IL_5J7L_279

Geometric discrepancy: 0.3381

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6XYW|1|1|G|1160
6XYW|1|1|C|1161
6XYW|1|1|A|1162
*
6XYW|1|1|U|1299
6XYW|1|1|C|1300

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AL

Uncharacterized protein At1g27435/F17L21.30

Chain Aj

At1g01640

Chain Aq

50S ribosomal protein L20