IL_6XYW_042
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUAUCAGGGC
- Length
- 24 nucleotides
- Bulged bases
- 6XYW|1|1|A|1276, 6XYW|1|1|U|1279
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XYW_042 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.1629
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
6XYW|1|1|G|1173
6XYW|1|1|G|1174
6XYW|1|1|A|1175
6XYW|1|1|A|1176
6XYW|1|1|A|1177
6XYW|1|1|A|1178
6XYW|1|1|G|1179
*
6XYW|1|1|C|1273
6XYW|1|1|G|1274
6XYW|1|1|A|1275
6XYW|1|1|A|1276
6XYW|1|1|A|1277
6XYW|1|1|A|1278
6XYW|1|1|U|1279
6XYW|1|1|G|1280
6XYW|1|1|U|1281
6XYW|1|1|A|1282
6XYW|1|1|U|1283
6XYW|1|1|C|1284
6XYW|1|1|A|1285
6XYW|1|1|G|1286
6XYW|1|1|G|1287
6XYW|1|1|G|1288
6XYW|1|1|C|1289
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AE
- Ribosomal protein
- Chain AL
- Uncharacterized protein At1g27435/F17L21.30
- Chain Ac
- 50S ribosomal protein L3-2, mitochondrial
- Chain Aj
- At1g01640
- Chain Am
- 60S ribosomal protein L16, mitochondrial
Coloring options: