IL_6XYW_048

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

6XYW|1|1|A|1237

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_048 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.4838

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XYW|1|1|G|1236
6XYW|1|1|A|1237
6XYW|1|1|A|1238
6XYW|1|1|A|1239
6XYW|1|1|G|1240
*
6XYW|1|1|C|1249
6XYW|1|1|U|1250
6XYW|1|1|C|1251

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AE

Ribosomal protein

Chain Ai

At4g35490