IL_6XYW_049

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

6XYW|1|1|U|1338

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_049 not in the Motif Atlas

Geometric match to IL_4V88_439

Geometric discrepancy: 0.315

The information below is about IL_4V88_439

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6XYW|1|1|C|1316
6XYW|1|1|C|1317
*
6XYW|1|1|G|1337
6XYW|1|1|U|1338
6XYW|1|1|G|1339

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Az

At5g55140