IL_6XYW_054
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XYW_054 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.1354
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6XYW|1|1|A|1418
6XYW|1|1|U|1419
6XYW|1|1|G|1420
6XYW|1|1|A|1421
6XYW|1|1|G|1422
6XYW|1|1|U|1423
6XYW|1|1|A|1424
6XYW|1|1|A|1425
*
6XYW|1|1|U|2322
6XYW|1|1|G|2323
6XYW|1|1|A|2324
6XYW|1|1|A|2325
6XYW|1|1|A|2326
6XYW|1|1|U|2327
6XYW|1|1|U|2328
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AB
- At1g26740/T24P13_11
- Chain Ad
- 50S ribosomal protein L4
- Chain Aq
- 50S ribosomal protein L20
- Chain As
- AT1G52370 protein
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