IL_6XYW_056

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GCUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_056 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.192

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

6XYW|1|1|G|1467
6XYW|1|1|C|1468
6XYW|1|1|U|1469
6XYW|1|1|U|1470
*
6XYW|1|1|A|1938
6XYW|1|1|C|1939

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AG

At5g40080

Chain At

At4g39880