IL_6XYW_063

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UCA*UCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_063 not in the Motif Atlas

Geometric match to IL_4V88_424

Geometric discrepancy: 0.3422

The information below is about IL_4V88_424

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6XYW|1|1|U|1672
6XYW|1|1|C|1673
6XYW|1|1|A|1674
*
6XYW|1|1|U|1869
6XYW|1|1|C|1870
6XYW|1|1|A|1871

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AO

Pentatricopeptide repeat-containing protein At1g60770