IL_6XYW_065

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UCU*GCGA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_065 not in the Motif Atlas

Geometric match to IL_3PDR_004

Geometric discrepancy: 0.3135

The information below is about IL_3PDR_004

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6XYW|1|1|U|1840
6XYW|1|1|C|1841
6XYW|1|1|U|1842
*
6XYW|1|1|G|1853
6XYW|1|1|C|1854
6XYW|1|1|G|1855
6XYW|1|1|A|1856

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AO

Pentatricopeptide repeat-containing protein At1g60770