IL_6XYW_066

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_066 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.1375

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6XYW|1|1|G|1984
6XYW|1|1|A|1985
6XYW|1|1|G|1986
*
6XYW|1|1|C|2317
6XYW|1|1|C|2318
6XYW|1|1|C|2319

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AB

At1g26740/T24P13_11

Chain Ac

50S ribosomal protein L3-2, mitochondrial

Chain An

At5g09770

Chain As

AT1G52370 protein