IL_6XYW_072

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UCU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_072 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.1871

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6XYW|1|1|U|2044
6XYW|1|1|C|2045
6XYW|1|1|U|2046
*
6XYW|1|1|A|2064
6XYW|1|1|A|2065
6XYW|1|1|A|2066

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AM

At1g73940/F2P9_19