IL_6XYW_074

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UGCUAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

6XYW|1|1|U|2118, 6XYW|1|1|U|2133, 6XYW|1|1|U|2137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_074 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1328

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6XYW|1|1|U|2115
6XYW|1|1|G|2116
6XYW|1|1|C|2117
6XYW|1|1|U|2118
6XYW|1|1|A|2119
6XYW|1|1|A|2120
6XYW|1|1|G|2121
*
6XYW|1|1|C|2130
6XYW|1|1|G|2131
6XYW|1|1|A|2132
6XYW|1|1|U|2133
6XYW|1|1|G|2134
6XYW|1|1|U|2135
6XYW|1|1|A|2136
6XYW|1|1|U|2137
6XYW|1|1|A|2138

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain Aa

60S ribosomal protein L2, mitochondrial

Chain Ab

Expressed protein