IL_6XYW_076

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6XYW|1|1|A|2210, 6XYW|1|1|A|2211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_076 not in the Motif Atlas

Homologous match to IL_4WF9_071

Geometric discrepancy: 0.2543

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6XYW|1|1|U|2158
6XYW|1|1|G|2159
*
6XYW|1|1|U|2209
6XYW|1|1|A|2210
6XYW|1|1|A|2211
6XYW|1|1|A|2212

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ab

Expressed protein