IL_6XYW_079

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

AGGAG*UGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_079 not in the Motif Atlas

Homologous match to IL_9DFE_075

Geometric discrepancy: 0.4715

The information below is about IL_9DFE_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6XYW|1|1|A|2173
6XYW|1|1|G|2174
6XYW|1|1|G|2175
6XYW|1|1|A|2176
6XYW|1|1|G|2177
*
6XYW|1|1|U|2193
6XYW|1|1|G|2194
6XYW|1|1|A|2195
6XYW|1|1|A|2196
6XYW|1|1|U|2197

Current chains

Chain 1

RNA (2842-MER)

Nearby chains